You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: summer_course2020.md
+9-4Lines changed: 9 additions & 4 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -1,6 +1,6 @@
1
1
## Got Behavior? Get Poses ... <imgsrc="https://images.squarespace-cdn.com/content/v1/57f6d51c9f74566f55ecf271/1572296495650-Y4ZTJ2XP2Z9XF1AD74VW/ke17ZwdGBToddI8pDm48kMulEJPOrz9Y8HeI7oJuXxR7gQa3H78H3Y0txjaiv_0fDoOvxcdMmMKkDsyUqMSsMWxHk725yiiHCCLfrh8O1z5QPOohDIaIeljMHgDF5CVlOqpeNLcJ80NK65_fV7S1UZiU3J6AN9rgO1lHw9nGbkYQrCLTag1XBHRgOrY8YAdXW07ycm2Trb21kYhaLJjddA/DLC_logo_blk-01.png?format=1000w"width="350"title="DLC-live"alt="DLC LIVE!"align="right"vspace = "50">
2
2
3
-
This document is a **WIP**outline of resources for an informal "spring/summer course" for those wanting to learn to use DeepLabCut while responsibilty isolating due to COVID-19.
3
+
This document is an outline of resources for an informal "spring/summer course" for those wanting to learn to use DeepLabCut while responsibilty isolating due to COVID-19. We except it to take roughly 1 week to get through.
4
4
5
5
www.deeplabcut.org
6
6
@@ -14,6 +14,8 @@ You need: Anaconda for python3 and DeepLabCut installed (CPU version)
14
14
- you should have a [CPU version of DeepLabCut installed on your laptop](https://github.com/AlexEMG/DeepLabCut/blob/master/conda-environments/README.md). We will assume you don't all have GPUs at home, so we will
15
15
utilize cloud-computing resources for those steps.
@@ -22,20 +24,21 @@ utilize cloud-computing resources for those steps.
22
24
23
25
-**Learning:** although minimal to no Python coding is required (i.e. you could use the DLC GUI to run the full program without it), here are some resources you may want to check out. [Software Carpentry: Programming with Python](https://swcarpentry.github.io/python-novice-inflammation/)
24
26
27
+
-**Learning:** Watch a talk from Alexander Mathis (a lead DeepLabCut developer) [talk about DeepLabCut!](https://www.youtube.com/watch?v=ZjWPHM0sL4E)
28
+
25
29
-**DEMO:** Can I DEMO DEEPLABCUT (DLC) quickly?
26
30
- Yes: [you can click through this DEMO notebook](https://colab.research.google.com/github/AlexEMG/DeepLabCut/blob/master/examples/COLAB_DEMO_mouse_openfield.ipynb)
27
31
- AND follow along with me: [Video Tutorial!](https://www.youtube.com/watch?v=DRT-Cq2vdWs)
32
+
28
33
29
-
-**WATCH:** How do you know DLC is installed properly? (i.e. how to use our test script!)[Video Tutorial!](https://youtu.be/IOWtKn3l33s)
34
+
-**WATCH:** How do you know DLC is installed properly? (i.e. how to use our test script!)[Video Tutorial!](https://youtu.be/IOWtKn3l33s)
-**REVIEW PAPER:** The state of animal pose estmiation w/deep learning i.e. "Deep learning tools for the measurement of animal behavior in neuroscience" [arXiv](https://arxiv.org/abs/1909.13868) & [published version](https://www.sciencedirect.com/science/article/pii/S0959438819301151)
35
40
36
41
37
-
38
-
39
42
-**WATCH:** There are a lot os docs... where to begin: [Video Tutorial!](https://www.youtube.com/watch?v=A9qZidI7tL8)
40
43
41
44
### **Module 1: getting started on your own data**
@@ -60,6 +63,8 @@ You can use our demo videos, grab some from the internet, or use whatever older
60
63
-**Slides:**[Overview of creating training and test data, and training networks](https://github.com/DeepLabCut/DeepLabCut-Workshop-Materials/blob/master/part2-network.pdf)
61
64
-**READ ME PLEASE:**[What are convolutional neural networks?](https://towardsdatascience.com/a-comprehensive-guide-to-convolutional-neural-networks-the-eli5-way-3bd2b1164a53)
62
65
66
+
-**READ ME PLEASE:** Here is a new paper from us describing challenges in robust pose estimation, why PRETRAINING really matters - which was our major scientific contribution to low-data input pose-estimation - and it describes new networks that are availble to you. [Pretraining boosts out-of-domain robustness for pose estimation](https://paperswithcode.com/paper/pretraining-boosts-out-of-domain-robustness)
67
+
63
68
Before you create a training/test set, please read/watch:
64
69
-**More information:**[Which types neural networks are available, and what should I use?](https://github.com/AlexEMG/DeepLabCut/wiki/What-neural-network-should-I-use%3F)
65
70
-**WATCH:** Video tutorial 1: [How to test different networks in a controlled way](https://www.youtube.com/watch?v=WXCVr6xAcCA)
0 commit comments